Correct, however the problem persists even after I re-enabled the front headers. The actual PSU doesn't have a on/off switch, it is switchless. Before the storm and with my old BFG 680i, I never had this problem...
EDIT > Is it possible that the Case was shot yesterday too and even though the PC recognizes to shutdown and restart when the headers are plugged in, the PSU is not reading it?
Also, is it possible I have the Switches in wrong, I don't know if you need to install them according to a +/- method as there are 2 sides. I don't know if that would cause the problem, even though the PC is still recognizing the buttons for shutdowns and restarts.