Right ok, from what I have quickly read I must add, the 930 with D0 stepping should not be hitting a ceiling @ 3.6. Did you run the Rig at stock and then benchmark for overall stability when you finished building?
It sounds very much like to me that the CPU is throttling due to heat, despite what you would expect on that multi. Two things that I believe that need to be checked if confined to the CPU. One, turn off that turbo boost thing in BIOS (I know it was mentioned) and make sure it is not on auto.
Two, take off the HSF and clean it thoroughly, you only need to apply a small amount to the die. Too much will have the opposite effect in terms of the heat being drawn up through the unit. If heat congregates around the die and is trapped, the CPU will throttle. Also the HSF may need lapping, or just good practice anyway.
If it is not that, then I would recommend defaulting to stock and then stress test the system. One thing I further I would like to ask is, how good is the Case. With the three case fans, how did you set them up and where?