have had the second HD installed for about a month to month and a half and it worked fine. I had changed it to a slave because it was starting to click when booting and was worried about it going bad
When it started making the clicking and therefore telling you loud and clear that it was failing you should have backed up that precious data. It may be too late now.
Were both drives formatted as NTFS by chance? Is the bad drive recognized in the BIOS correctly?
Some more info about the specific hardware, etc. is always helpful.