I don't think the dust will be a major problem, I can just clean it out every week or whenever it needs it. It's not like the computer is inaccessible, it's right by my knee (but out of "bang my knee on it" range).
I'm also thinking of the airflow if I was to fit a cover over it. might be something to look into though if I find something suitable.
Unfortunately I don't have any old spare cases with power switches, I threw the old cases I had away because they took up too much space in my room. My wires idea didn't work too well, but I think I can fix something up from some other connectors and a push switch. In the meantime, the bottom of the shelf is detachable anyway, so it's not too much trouble to pull it out a few inches and short the power pins.
When I get something rigged up I'll be sure to post back, I'll also post when I have time to get it up and running with an OS.
Thanks for the comments patio.