OK, I ran Avast, SAS, Spybot and a thourough Scandisk and didn't find any problems. Interestingly though, when I opened DirectX diagnostic my desktop icons were fine but the background shrunk to a little square in the middle of the screen. A restart fixed it and when I opened DirectX again it didn't do it.
Some of my programs are still displaying oddly. Either the parts are out of place or completely out of view. Some things that use to max can't anymore. Even web pages are narrowed when I used to have a scrollbar at the bottom.
Any thoughts?